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Getting Started
Overview
Installation
Quickstart
Usage Guide
Ontology management
Installing ontologies (pico)
Included ontologies
Ontology packages
Supported formats
Terminological knowledge
Assertional knowledge
Sessions
Introduction
Managing the session contents
Queries: using the session object
Queries: using the search module
Queries: using SPARQL
RDF Import and export
Wrappers
Introduction
SQLite
SQLAlchemy
Dataspace
Remote
Visualization
Developer's documentation
Wrapper development
Operations development
Additional Info
API Reference
Contribute
Related links
License
Data protection
Imprint
Contact
Index
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A
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B
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C
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D
|
E
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F
|
G
|
H
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I
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L
|
M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
_
__and__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__bool__() (simphony_osp.ontology.OntologyEntity method)
__call__() (simphony_osp.ontology.OntologyClass method)
__contains__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.OntologyNamespace method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.Session method)
(simphony_osp.session.SessionSet method)
__delitem__() (simphony_osp.ontology.OntologyIndividual method)
__enter__() (simphony_osp.session.Session method)
__eq__() (simphony_osp.ontology.OntologyEntity method)
(simphony_osp.ontology.OntologyNamespace method)
__exit__() (simphony_osp.session.Session method)
__ge__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__getattr__() (simphony_osp.ontology.OntologyIndividual method)
(simphony_osp.ontology.OntologyNamespace method)
__getitem__() (simphony_osp.ontology.OntologyIndividual method)
(simphony_osp.ontology.OntologyNamespace method)
__gt__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__iadd__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__iand__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__init__() (in module simphony_osp.development.Wrapper)
(simphony_osp.development.Operations method)
(simphony_osp.development.Wrapper method)
(simphony_osp.session.Session method)
__invert__() (simphony_osp.ontology.RelationshipSet method)
__ior__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__isub__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__iter__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.OntologyNamespace method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.Session method)
(simphony_osp.session.SessionSet method)
__ixor__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__le__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__len__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.OntologyNamespace method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.Session method)
(simphony_osp.session.SessionSet method)
__lt__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__ne__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__or__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__radd__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__ror__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__rsub__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__rxor__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
__setattr__() (simphony_osp.ontology.OntologyIndividual method)
__setitem__() (simphony_osp.ontology.OntologyIndividual method)
__xor__() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
_repr_mimebundle_() (simphony_osp.tools.semantic2dot.Semantic2Dot method)
A
add() (in module simphony_osp.development.Wrapper)
(simphony_osp.development.Wrapper method)
(simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.Session method)
(simphony_osp.session.SessionSet method)
ADDED (simphony_osp.development.BufferType attribute)
all() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
AND (simphony_osp.ontology.COMPOSITION_OPERATOR attribute)
AnnotationSet (class in simphony_osp.ontology)
any() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
attribute (simphony_osp.ontology.Restriction property)
ATTRIBUTE_RESTRICTION (simphony_osp.ontology.RESTRICTION_TYPE attribute)
attributes (simphony_osp.ontology.OntologyClass property)
(simphony_osp.ontology.OntologyIndividual property)
AttributeSet (class in simphony_osp.ontology)
axioms (simphony_osp.ontology.OntologyClass property)
B
branch() (in module simphony_osp.tools)
BufferType (class in simphony_osp.development)
C
classes (simphony_osp.ontology.OntologyIndividual property)
clear() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.Session method)
(simphony_osp.session.SessionSet method)
close() (in module simphony_osp.development.Wrapper)
(simphony_osp.development.Wrapper method)
(simphony_osp.session.Session method)
commit() (in module simphony_osp.development.Wrapper)
(simphony_osp.development.Wrapper method)
(simphony_osp.session.Session method)
Composition (class in simphony_osp.ontology)
COMPOSITION_OPERATOR (class in simphony_osp.ontology)
compute() (in module simphony_osp.development.Wrapper)
(simphony_osp.development.Wrapper method)
(simphony_osp.session.Session method)
connect() (simphony_osp.ontology.OntologyIndividual method)
copy() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
D
datatype (simphony_osp.ontology.OntologyAttribute property)
delete() (in module simphony_osp.development.Wrapper)
(simphony_osp.development.Wrapper method)
(simphony_osp.session.Session method)
DELETED (simphony_osp.development.BufferType attribute)
difference() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
difference_update() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
direct_subclasses (simphony_osp.ontology.OntologyEntity property)
direct_superclasses (simphony_osp.ontology.OntologyEntity property)
discard() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
disconnect() (simphony_osp.ontology.OntologyIndividual method)
E
EXACTLY (simphony_osp.ontology.RESTRICTION_QUANTIFIER attribute)
export_file() (in module simphony_osp.tools)
F
find() (in module simphony_osp.tools.search)
find_by_attribute() (in module simphony_osp.tools.search)
find_by_class() (in module simphony_osp.tools.search)
find_by_identifier() (in module simphony_osp.tools.search)
find_operations() (in module simphony_osp.development)
find_relationships() (in module simphony_osp.tools.search)
from_iri() (simphony_osp.ontology.OntologyNamespace method)
from_label() (simphony_osp.ontology.OntologyNamespace method)
(simphony_osp.session.Session method)
from_suffix() (simphony_osp.ontology.OntologyNamespace method)
G
get() (simphony_osp.ontology.OntologyIndividual method)
(simphony_osp.ontology.OntologyNamespace method)
(simphony_osp.session.Session method)
H
host() (in module simphony_osp.tools)
I
identifier (simphony_osp.ontology.OntologyEntity property)
import_file() (in module simphony_osp.tools)
individual (simphony_osp.ontology.AnnotationSet property)
(simphony_osp.ontology.AttributeSet property)
(simphony_osp.ontology.RelationshipSet property)
install() (in module simphony_osp.tools.pico)
intersection() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
intersection_update() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
inverse (simphony_osp.ontology.OntologyRelationship property)
(simphony_osp.ontology.RelationshipSet property)
iri (simphony_osp.development.Operations property)
(simphony_osp.ontology.OntologyEntity property)
(simphony_osp.ontology.OntologyNamespace property)
is_a() (simphony_osp.ontology.OntologyIndividual method)
is_subclass_of() (simphony_osp.ontology.OntologyEntity method)
is_superclass_of() (simphony_osp.ontology.OntologyEntity method)
isdisjoint() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
issubset() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
issuperset() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
iter() (simphony_osp.ontology.OntologyIndividual method)
(simphony_osp.session.Session method)
iter_labels() (simphony_osp.ontology.OntologyEntity method)
L
label (simphony_osp.ontology.OntologyEntity property)
label_lang (simphony_osp.ontology.OntologyEntity property)
label_literal (simphony_osp.ontology.OntologyEntity property)
load() (in module simphony_osp.development.Wrapper)
(simphony_osp.development.Wrapper method)
locked (simphony_osp.session.Session property)
M
MAX (simphony_osp.ontology.RESTRICTION_QUANTIFIER attribute)
MIN (simphony_osp.ontology.RESTRICTION_QUANTIFIER attribute)
MultipleResultsError (class in simphony_osp.ontology)
N
name (simphony_osp.ontology.OntologyNamespace property)
namespace (simphony_osp.ontology.OntologyEntity property)
namespaces() (in module simphony_osp.tools.pico)
NOT (simphony_osp.ontology.COMPOSITION_OPERATOR attribute)
O
one() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
ONLY (simphony_osp.ontology.RESTRICTION_QUANTIFIER attribute)
OntologyAnnotation (class in simphony_osp.ontology)
OntologyAttribute (class in simphony_osp.ontology)
OntologyClass (class in simphony_osp.ontology)
OntologyEntity (class in simphony_osp.ontology)
OntologyIndividual (class in simphony_osp.ontology)
OntologyNamespace (class in simphony_osp.ontology)
OntologyRelationship (class in simphony_osp.ontology)
open() (in module simphony_osp.development.Wrapper)
(simphony_osp.development.Wrapper method)
operands (simphony_osp.ontology.Composition property)
Operations (class in simphony_osp.development)
operations (simphony_osp.ontology.OntologyIndividual property)
operator (simphony_osp.ontology.Composition property)
optional_attributes (simphony_osp.ontology.OntologyClass property)
OR (simphony_osp.ontology.COMPOSITION_OPERATOR attribute)
P
packages() (in module simphony_osp.tools.pico)
pop() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
populate() (in module simphony_osp.development.Wrapper)
(simphony_osp.development.Wrapper method)
predicate (simphony_osp.ontology.AnnotationSet property)
(simphony_osp.ontology.AttributeSet property)
(simphony_osp.ontology.RelationshipSet property)
pretty_print() (in module simphony_osp.tools)
Q
quantifier (simphony_osp.ontology.Restriction property)
R
relationship (simphony_osp.ontology.Restriction property)
RELATIONSHIP_RESTRICTION (simphony_osp.ontology.RESTRICTION_TYPE attribute)
relationships_between() (in module simphony_osp.tools)
RelationshipSet (class in simphony_osp.ontology)
remove() (in module simphony_osp.development.Wrapper)
(simphony_osp.development.Wrapper method)
(simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
render() (simphony_osp.tools.semantic2dot.Semantic2Dot method)
Restriction (class in simphony_osp.ontology)
RESTRICTION_QUANTIFIER (class in simphony_osp.ontology)
RESTRICTION_TYPE (class in simphony_osp.ontology)
ResultEmptyError (class in simphony_osp.ontology)
rtype (simphony_osp.ontology.Restriction property)
S
save() (in module simphony_osp.development.Wrapper)
(simphony_osp.development.Wrapper method)
Semantic2Dot (class in simphony_osp.tools.semantic2dot)
semantic2dot() (in module simphony_osp.tools)
Session (class in simphony_osp.session)
session (simphony_osp.ontology.OntologyEntity property)
SessionSet (class in simphony_osp.session)
SOME (simphony_osp.ontology.RESTRICTION_QUANTIFIER attribute)
sparql() (in module simphony_osp.tools.search)
(simphony_osp.session.Session method)
subclasses (simphony_osp.ontology.OntologyEntity property)
superclasses (simphony_osp.ontology.OntologyEntity property)
symmetric_difference() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
symmetric_difference_update() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
T
target (simphony_osp.ontology.Restriction property)
triples (simphony_osp.ontology.OntologyEntity property)
triples() (in module simphony_osp.development.Wrapper)
(simphony_osp.development.Wrapper method)
U
uninstall() (in module simphony_osp.tools.pico)
union() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
update() (simphony_osp.ontology.AnnotationSet method)
(simphony_osp.ontology.AttributeSet method)
(simphony_osp.ontology.RelationshipSet method)
(simphony_osp.session.SessionSet method)
V
VALUE (simphony_osp.ontology.RESTRICTION_QUANTIFIER attribute)
W
Wrapper (class in simphony_osp.development)