Index

_ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | U | V

_

__delitem__() (simphony.io.data_container_table.DataContainerTable method)
(simphony.io.h5_cuds_items.H5CUDSItems method)
__getitem__() (simphony.io.data_container_table.DataContainerTable method)
(simphony.io.h5_cuds_items.H5CUDSItems method)
(simphony.io.indexed_data_container_table.IndexedDataContainerTable method)
__iter__() (simphony.io.data_container_table.DataContainerTable method)
(simphony.io.h5_cuds_items.H5CUDSItems method)
(simphony.io.indexed_data_container_table.IndexedDataContainerTable method)
__len__() (simphony.io.data_container_table.DataContainerTable method)
(simphony.io.h5_cuds_items.H5CUDSItems method)
(simphony.io.indexed_data_container_table.IndexedDataContainerTable method)
__setitem__() (simphony.core.data_container.DataContainer method)
(simphony.io.data_container_table.DataContainerTable method)
(simphony.io.h5_cuds_items.H5CUDSItems method)
(simphony.io.indexed_data_container_table.IndexedDataContainerTable method)
_bonds (simphony.cuds.particles.Particles attribute)
_particles (simphony.cuds.particles.Particles attribute)

A

ABCLattice (class in simphony.cuds.abc_lattice)
ABCMesh (class in simphony.cuds.abc_mesh)
ABCModelingEngine (class in simphony.cuds.abc_modeling_engine)
ABCParticles (class in simphony.cuds.abc_particles)
add_bonds() (simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_particles.H5Particles method)
add_cells() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
add_dataset() (simphony.cuds.abc_modeling_engine.ABCModelingEngine method)
(simphony.io.h5_cuds.H5CUDS method)
add_edges() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
add_faces() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
add_material() (simphony.cuds.materials.Materials method)
add_particles() (simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_particles.H5Particles method)
add_points() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
add_safe() (simphony.io.h5_cuds_items.H5CUDSItems method)
add_unsafe() (simphony.io.h5_cuds_items.H5CUDSItems method)
allowed_number_materials (simphony.cuds.material_relations.material_relation.MaterialRelation attribute), [1]
append() (simphony.io.data_container_table.DataContainerTable method)
(simphony.io.indexed_data_container_table.IndexedDataContainerTable method)

B

BC (simphony.cuds.abc_modeling_engine.ABCModelingEngine attribute)
Bond (class in simphony.cuds.particles)

C

Cell (class in simphony.cuds.mesh)
cells (simphony.cuds.mesh.Mesh attribute)
close() (simphony.io.h5_cuds.H5CUDS method)
CM (simphony.cuds.abc_modeling_engine.ABCModelingEngine attribute)
coordinates (simphony.cuds.mesh.Point attribute)
(simphony.cuds.particles.Particle attribute)
Coulomb (class in simphony.cuds.material_relations.coulomb)
count_of() (simphony.cuds.abc_lattice.ABCLattice method)
(simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.lattice.Lattice method)
(simphony.cuds.mesh.Mesh method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_lattice.H5Lattice method)
(simphony.io.h5_mesh.H5Mesh method)
(simphony.io.h5_particles.H5Particles method)
create_new() (simphony.io.h5_lattice.H5Lattice class method)
cutoff_distance (simphony.cuds.material_relations.coulomb.Coulomb attribute), [1]
(simphony.cuds.material_relations.lennard_jones.LennardJones attribute), [1]

D

data (simphony.cuds.abc_lattice.ABCLattice attribute)
(simphony.cuds.abc_particles.ABCParticles attribute)
(simphony.cuds.lattice.Lattice attribute), [1]
(simphony.cuds.lattice.LatticeNode attribute)
(simphony.cuds.material.Material attribute)
(simphony.cuds.mesh.Element attribute)
(simphony.cuds.mesh.Mesh attribute), [1]
(simphony.cuds.mesh.Point attribute)
(simphony.cuds.particles.Bond attribute)
(simphony.cuds.particles.Particle attribute)
(simphony.cuds.particles.Particles attribute), [1]
(simphony.io.h5_lattice.H5Lattice attribute)
(simphony.io.h5_mesh.H5Mesh attribute), [1]
(simphony.io.h5_particles.H5Particles attribute)
DataContainer (class in simphony.core.data_container)
DataContainerTable (class in simphony.io.data_container_table)
description (simphony.cuds.material.Material attribute)
(simphony.cuds.material_relations.material_relation.MaterialRelation attribute), [1]
dielectric_constant (simphony.cuds.material_relations.coulomb.Coulomb attribute), [1]

E

Edge (class in simphony.cuds.mesh)
edges (simphony.cuds.mesh.Mesh attribute)
Element (class in simphony.cuds.mesh)
energy_well_depth (simphony.cuds.material_relations.lennard_jones.LennardJones attribute), [1]

F

Face (class in simphony.cuds.mesh)
faces (simphony.cuds.mesh.Mesh attribute)
from_bond() (simphony.cuds.particles.Bond class method)
from_cell() (simphony.cuds.mesh.Cell class method)
from_edge() (simphony.cuds.mesh.Edge class method)
from_face() (simphony.cuds.mesh.Face class method)
from_material() (simphony.cuds.material.Material class method)
from_particle() (simphony.cuds.particles.Particle class method)
from_point() (simphony.cuds.mesh.Point class method)

G

get_bond() (simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_particles.H5Particles method)
get_cell() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
get_coordinate() (simphony.cuds.abc_lattice.ABCLattice method)
get_dataset() (simphony.cuds.abc_modeling_engine.ABCModelingEngine method)
(simphony.io.h5_cuds.H5CUDS method)
get_dataset_names() (simphony.cuds.abc_modeling_engine.ABCModelingEngine method)
(simphony.io.h5_cuds.H5CUDS method)
get_edge() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
get_face() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
get_material() (simphony.cuds.materials.Materials method)
get_node() (simphony.cuds.abc_lattice.ABCLattice method)
(simphony.cuds.lattice.Lattice method)
(simphony.io.h5_lattice.H5Lattice method)
get_particle() (simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_particles.H5Particles method)
get_point() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)

H

H5BondItems (class in simphony.io.h5_particles)
H5CUDS (class in simphony.io.h5_cuds)
H5CUDSItems (class in simphony.io.h5_cuds_items)
H5Lattice (class in simphony.io.h5_lattice)
H5Mesh (class in simphony.io.h5_mesh)
H5ParticleItems (class in simphony.io.h5_particles)
H5Particles (class in simphony.io.h5_particles)
has_bond() (simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_particles.H5Particles method)
has_cells() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
has_edges() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
has_faces() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
has_particle() (simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_particles.H5Particles method)

I

index (simphony.cuds.lattice.LatticeNode attribute)
IndexedDataContainerTable (class in simphony.io.indexed_data_container_table)
iter_bonds() (simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_particles.H5Particles method)
iter_cells() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
iter_datasets() (simphony.cuds.abc_modeling_engine.ABCModelingEngine method)
(simphony.io.h5_cuds.H5CUDS method)
iter_edges() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
iter_faces() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
iter_materials() (simphony.cuds.materials.Materials method)
iter_nodes() (simphony.cuds.abc_lattice.ABCLattice method)
(simphony.cuds.lattice.Lattice method)
(simphony.io.h5_lattice.H5Lattice method)
iter_particles() (simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_particles.H5Particles method)
iter_points() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
itersequence() (simphony.io.data_container_table.DataContainerTable method)
(simphony.io.h5_cuds_items.H5CUDSItems method)

K

kind (simphony.cuds.material_relations.material_relation.MaterialRelation attribute), [1]

L

Lattice (class in simphony.cuds.lattice)
LatticeNode (class in simphony.cuds.lattice)
LennardJones (class in simphony.cuds.material_relations.lennard_jones)

M

make_base_centered_monoclinic_lattice() (in module simphony.cuds.lattice)
make_base_centered_orthorhombic_lattice() (in module simphony.cuds.lattice)
make_body_centered_cubic_lattice() (in module simphony.cuds.lattice)
make_body_centered_orthorhombic_lattice() (in module simphony.cuds.lattice)
make_body_centered_tetragonal_lattice() (in module simphony.cuds.lattice)
make_cubic_lattice() (in module simphony.cuds.lattice)
make_face_centered_cubic_lattice() (in module simphony.cuds.lattice)
make_face_centered_orthorhombic_lattice() (in module simphony.cuds.lattice)
make_hexagonal_lattice() (in module simphony.cuds.lattice)
make_monoclinic_lattice() (in module simphony.cuds.lattice)
make_orthorhombic_lattice() (in module simphony.cuds.lattice)
make_rhombohedral_lattice() (in module simphony.cuds.lattice)
make_tetragonal_lattice() (in module simphony.cuds.lattice)
make_triclinic_lattice() (in module simphony.cuds.lattice)
Material (class in simphony.cuds.material)
MaterialRelation (class in simphony.cuds.material_relations.material_relation)
Materials (class in simphony.cuds.materials)
materials (simphony.cuds.abc_modeling_engine.ABCModelingEngine attribute)
(simphony.cuds.material_relations.material_relation.MaterialRelation attribute), [1]
Mesh (class in simphony.cuds.mesh)

N

name (simphony.cuds.abc_lattice.ABCLattice attribute)
(simphony.cuds.abc_mesh.ABCMesh attribute)
(simphony.cuds.abc_particles.ABCParticles attribute)
(simphony.cuds.lattice.Lattice attribute)
(simphony.cuds.material_relations.material_relation.MaterialRelation attribute), [1]
(simphony.cuds.mesh.Mesh attribute)
(simphony.cuds.particles.Particles attribute)
(simphony.io.h5_lattice.H5Lattice attribute)
(simphony.io.h5_mesh.H5Mesh attribute), [1]
(simphony.io.h5_particles.H5Particles attribute)

O

open() (simphony.io.h5_cuds.H5CUDS class method)
origin (simphony.cuds.abc_lattice.ABCLattice attribute)
(simphony.cuds.lattice.Lattice attribute), [1]
(simphony.io.h5_lattice.H5Lattice attribute)

P

parameters (simphony.cuds.material_relations.material_relation.MaterialRelation attribute), [1]
Particle (class in simphony.cuds.particles)
Particles (class in simphony.cuds.particles)
particles (simphony.cuds.particles.Bond attribute)
Point (class in simphony.cuds.mesh)
points (simphony.cuds.mesh.Element attribute)
(simphony.cuds.mesh.Mesh attribute)
primitive_cell (simphony.cuds.abc_lattice.ABCLattice attribute), [1]
(simphony.cuds.lattice.Lattice attribute)

R

remove_bonds() (simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_particles.H5Particles method)
remove_dataset() (simphony.cuds.abc_modeling_engine.ABCModelingEngine method)
(simphony.io.h5_cuds.H5CUDS method)
remove_material() (simphony.cuds.materials.Materials method)
remove_particles() (simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_particles.H5Particles method)
run() (simphony.cuds.abc_modeling_engine.ABCModelingEngine method)

S

simphony.core.data_container (module)
simphony.cuds.abc_lattice (module)
simphony.cuds.abc_mesh (module)
simphony.cuds.abc_modeling_engine (module)
simphony.cuds.abc_particles (module)
simphony.cuds.lattice (module)
simphony.cuds.material (module)
simphony.cuds.material_relations.coulomb (module)
simphony.cuds.material_relations.lennard_jones (module)
simphony.cuds.material_relations.material_relation (module)
simphony.cuds.materials (module)
simphony.cuds.mesh (module)
simphony.cuds.particles (module)
simphony.io.data_container_description (module)
simphony.io.data_container_table (module)
simphony.io.h5_cuds (module)
simphony.io.h5_cuds_items (module)
simphony.io.h5_lattice (module)
simphony.io.h5_mesh (module)
simphony.io.h5_particles (module)
simphony.io.indexed_data_container_table (module)
size (simphony.cuds.abc_lattice.ABCLattice attribute)
(simphony.cuds.lattice.Lattice attribute), [1]
(simphony.io.h5_lattice.H5Lattice attribute)
SP (simphony.cuds.abc_modeling_engine.ABCModelingEngine attribute)
supported_parameters (simphony.cuds.material_relations.material_relation.MaterialRelation attribute), [1]

U

uid (simphony.cuds.material.Material attribute)
(simphony.cuds.mesh.Element attribute)
(simphony.cuds.mesh.Point attribute)
(simphony.cuds.particles.Bond attribute)
(simphony.cuds.particles.Particle attribute)
update() (simphony.core.data_container.DataContainer method)
update_bonds() (simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_particles.H5Particles method)
update_cells() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
update_edges() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
update_existing() (simphony.io.h5_cuds_items.H5CUDSItems method)
update_faces() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)
update_material() (simphony.cuds.materials.Materials method)
update_nodes() (simphony.cuds.abc_lattice.ABCLattice method)
(simphony.cuds.lattice.Lattice method)
(simphony.io.h5_lattice.H5Lattice method)
update_particles() (simphony.cuds.abc_particles.ABCParticles method)
(simphony.cuds.particles.Particles method)
(simphony.io.h5_particles.H5Particles method)
update_points() (simphony.cuds.abc_mesh.ABCMesh method)
(simphony.cuds.mesh.Mesh method)
(simphony.io.h5_mesh.H5Mesh method)

V

valid (simphony.io.data_container_table.DataContainerTable attribute)
(simphony.io.h5_cuds_items.H5CUDSItems attribute)
(simphony.io.indexed_data_container_table.IndexedDataContainerTable attribute)
valid() (simphony.io.h5_cuds.H5CUDS method)
van_der_waals_radius (simphony.cuds.material_relations.lennard_jones.LennardJones attribute), [1]